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Protein Databases & Analysis
Learn all about protein sequences, proteome, protein databases and protein-Related datasets. You’ll get to know how to retrieve and analyze protein and their annotation.
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Total Duration:
48
7hr 52 mins
Learn all about Protein sequences, Proteome, and Protein-Related data through exploring UniProt. You’ll get to know how to retrieve, analyze, visualise, align Protein data from UniProt and much more.
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9
80 min
A protein family is the group of proteins that are evolutionary-related. Learn to retrieve, visualize and analyze the proteins’ evolutionary associated data from these various protein databases such as InterPro, Pfam, etc.
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5
53 Mins
Get an elaborated study of protein analysis and prediction of specific regions of the proteins through utilizing various tools such as SignalP, TargetP, Aln2Plot, DeepCoil, HHrepID and many more.
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14
Total Duration:
1 hr 47 mins
PDB is the largest database for 3D structures of Protein and macromolecules. Master yourself by learning everything you need to know about retrieving, visualizing, analyzing, mapping genomic position to the protein structure by utilizing PDB and much more.
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11
Total Duration:
1 hr 35 mins
Learn to analyze the conserved, functional and structural part of the proteins, also known as motif & domain. You’ll get to search, compare, visualize, and analyze these regions of the proteins through various bioinformatics tools.
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6
Total Duration:
1 hr 27 mins
Learn to predict the local secondary structure of the proteins based on their amino acid sequences. You’ll be able to predict, analyze, visualize the secondary structure of the protein through various tools and much more.
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1
14 min
STRING is a database for predicted and known protein-protein interactions; Two and more molecules of proteins can form a physical contact and these associations are known as protein-protein interactions. Learn to retrieve and analyze this biological data by using STRING.
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1
21 min
Learn how you can retrieve and analyze protein data from SWISS-2D PAGE database which is identified by different SDS-PAGE and 2D-PAGE reference maps. You’ll learn to locate proteins, retrieve, and analyze these 2D-PAGE maps.
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1
15 min
File Formats
Get a comprehensive understanding of the most used file formats in Bioinformatics. You’ll get to know about where, which and how these formats work and how to analyze the biological data stored in them. Consider this course a fundamental to your journey to be a bioinformatics data analyst.
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15
2hr 54 mins
Get a comprehensive understanding of the layout & the content of the Sequence formats that are being used highly in Bioinformatics and Life Sciences analysis. You’ll get to know about where, which and how these formats work and how to analyze the biological data.
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6
46 Min
Get a comprehensive understanding of the layout & the content of the Variant Call Format which is being used for storing gene sequence variation. You’ll get to know about where, which and how this format works and how to analyze the biological data.
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1
14 min
Get a comprehensive study of the layout & the content of the Alignment Formats that stores aligned sequences, their identifier codes, etc. You’ll get to know about where, which and how these formats work and how to analyze the biological data.
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5
Total Duration:
58 mins
Get a comprehensive understanding of the layout & the content of the Sequence quality formats that are being used for storing biological sequence & its corresponding quality scores. You’ll get to know about where, which and how these formats work and how to analyze the biological data.
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3
Total Duration:
23 mins
Sequence Alaignment & Aanalysis
Learn the fundamentals of sequence alignment of DNA, protein and genome sequences. From pairwise sequence alignment & multiple sequence alignment to sequence analysis, this course covers all of it. You’ll learn how to utilize alignment tools & software, analyze, visualize the alignments.
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26
4hr 30 mins
Get a comprehensive study of multiple sequence alignment (MSA) which is the alignment of more than two biological sequences. Learn how you can perform MSA through various tools and programs and how you can utilize the MSA in different areas of Bioinformatics
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6
54 min
Learn how you can perform an alignment which identifies regions of similarity that may specify structural, functional, and/or evolutionary relationships between two biological sequences. Learn to analyze pairwise sequence alignment through various bioinformatics tools.
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4
28 mins
Learn how you can search the sequence (e.g similarity regions) through databases. You’ll learn to perform sequence searching by utilizing BLAST so you can analyze the functional and evolutionary clues about the structure & function of your novel sequence.
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3
20 mins
Learn how you can increase the quality of subsequent analysis by removing poorly aligned regions from the alignment. You’ll learn to trim alignment by utilizing TrimA1.
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1
14 mins
Learn to read (input) and write (output) sequences through seqret. You’ll learn different types of tasks such as reformatting sequences, extracting sequences from the databases and much more.
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1
13 mins
Learn to evaluate, calculate, visualize the statistics of the protein sequences and more. You’ll learn to play with various tools for these tasks such as Pepinfo, Pepstats, Pepwindow, etc.
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7
87 min
Get a comprehension understanding of sequence translation by using various tools. You’ll learn to translate nucleic acid sequences to corresponding peptide sequences and back-translation of nucleic acid sequences through peptide sequences.
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4
54 min
Phylogenetic Analysis & Tools
Get to learn all about multiple sequence alignment to build phylogenetic trees. Learn all about building phylogenetic trees; their analysis, visualization, annotation using various tools and software.
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14
2hr 44 mins
Learn all about Multiple Sequence Alignment and how you can avail MSA to perform phylogenetic analysis and generate phylogenetic trees from MSA. You’ll learn about sequence alignment of biological data, construction of Phylogenetic Trees, analysis, visualization by using various tools and Softwares.
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7
Total Duration:
85 min
Get a comprehension study of phylogenetic tree visualization and learn to annotate them by mapping different line types, shape, sizes or colors to the nodes of the trees through various tools and programs.
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7
Total Duration:
79 min
3D Structure Prediction
Learn how to predict the native conformation (3D structure) of unknown protein sequences. Throughout this course, you’ll learn how to do modeling of the protein structures using different techniques such as ab initio, threading and homology modeling along with the use of various protein structure visualization and evaluation tools.
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29
6hr 34 mins
Learn all about 3D-Structure Prediction from Unknown Protein Sequence to Prediction of its Native Conformation Prediction. You’ll learn to perform Protein structure prediction by availing various tools and programs such as MODELLER, Robetta, etc.
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Total Duration:
9
2 hrs
Learn how you perform structure analysis of proteins by utilizing various tools/web-servers. You’ll learn to analyze the protein structure and evaluate/validate the structure as well.
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10
Total Duration:
2Hr 15 min
Learn how you can visualize protein 3D structure. You’ll be able to visualize and analyze the structure by utilizing an open-source visualization system known as PyMol and a software known as Chimera.
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2
27 mins
Learn to predict the local secondary structure of the proteins based on their amino acid sequences. You’ll be able to predict, analyze, visualize the secondary structure of the protein through various tools and much more.
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8
1Hr 52 mins
Gene Prediction
Get to know all about gene prediction of eukaryotic, prokaryotic or unknown genomes and do the prediction of genes and proteins of unknown and non-annotated genomes. Throughout this course, we’ll explore various tools and programs that are being used for gene prediction.
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7
1 Hr 43 mins
Get a comprehension understanding of Gene Prediction from eukaryotic, prokaryotic, or unknown genomic sequences to the prediction of genes, codons, and proteins. We’ll explore various tools and programs that are being used for predicting genes & proteins.
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7
Total Duration:
1 Hr 43 mins
Molecular Docking
Learn from structure prediction to molecular modeling. In this course, you’ll learn the tools and servers used for molecular docking, virtual screening, evaluation and more including molecular docking of protein-ligand, protein-protein Docking, drug designing and much more.
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5
3hr 02 mins
Get a complete understanding of molecular docking, protein-protein docking, structures based drug designing. You’ll learn about molecular docking by utilizing Molecular Operating Environment (MOE), how you can use it for protein modeling, visualization and much more.
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Total Duration:
4
57 min
Learn to perform different types of docking, i.e Protein-Ligand docking and Protein-Protein Docking. You’ll learn to perform docking on various kinds of servers such as SwissDock, PatchDock, etc.
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7
78 Mins
Get a comprehensive understanding of docking complex evaluation and learn how you can evaluate a particular docking conformation through availing softwares such as PDBepisa.
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2
23 mins
Pharmacophore modeling is a very diverse subfield of computer-aided drug design (CADD). Learn how you can perform this successful modeling and evaluate pharmacokinetics by utilizing tools and softwares.
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2
24 mins
Genomics Tools
Learn how to use various genomics tools to do genome analysis and annotation.
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4
48 mins
Get a comprehensive study of Gene Structures and all about Genomic Analysis. You’ll get to explore the tools such as Gene structure Display Server, OriFinder (etc), their data analytics involved, techniques and much more.
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4
48 mins
MiRNA Prediction
Learn everything about miRNA prediction by exploring the miRBase database and miRNA target predictors. You’ll learn to retrieve targeted miRNA, predict different features of miRNA and much more by utilizing these various tools.
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Total Duration:
4
56 mins
Learn how you can retrieve, analyze and visualize the targeted miRNA sequences from miRNA database miRBase.
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Total Duration:
4
56 mins
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